{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"D5AT91","uniProtkbId":"D5AT91_RHOCB","entryAudit":{"firstPublicDate":"2010-06-15","lastAnnotationUpdateDate":"2026-06-10","lastSequenceUpdateDate":"2010-06-15","entryVersion":80,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)","taxonId":272942,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ADE85198.1"},{"evidenceCode":"ECO:0000313","source":"Proteomes","id":"UP000002361"}],"lineage":["Bacteria","Pseudomonadati","Pseudomonadota","Alphaproteobacteria","Rhodobacterales","Rhodobacter group","Rhodobacter"]},"proteinExistence":"1: Evidence at protein level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ADE85198.1"}],"value":"Transcriptional regulator, ArsR family"}}]},"genes":[{"orderedLocusNames":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ADE85198.1"}],"value":"RCAP_rcc01453"}]}],"features":[{"type":"Domain","location":{"start":{"value":31,"modifier":"EXACT"},"end":{"value":124,"modifier":"EXACT"}},"description":"HTH arsR-type","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50987"}]},{"type":"Modified residue","location":{"start":{"value":55,"modifier":"EXACT"},"end":{"value":55,"modifier":"EXACT"}},"description":"Cysteine persulfide","evidences":[{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8N"}]},{"type":"Modified residue","location":{"start":{"value":121,"modifier":"EXACT"},"end":{"value":121,"modifier":"EXACT"}},"description":"Cysteine persulfide","evidences":[{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8N"}]},{"type":"Disulfide bond","location":{"start":{"value":55,"modifier":"EXACT"},"end":{"value":121,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8O"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8K"},{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8L"}],"id":"KW-0002","category":"Technical term","name":"3D-structure"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023125"}],"id":"KW-0238","category":"Molecular function","name":"DNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"Proteomes","id":"UP000002361"}],"id":"KW-1185","category":"Technical term","name":"Reference proteome"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023163"}],"id":"KW-0804","category":"Biological process","name":"Transcription"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023015"}],"id":"KW-0805","category":"Biological process","name":"Transcription regulation"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-BQMEFQRL0B30O","citationType":"submission","authors":["Strnad H.","Lapidus A.","Vlcek C.","Ulbrich P.","Paces J.","Maltsev N.","Kumar V.","Kogan Y.","Milgram A.","Rebrekov D.","Mazur M.","Cox R.","Kyrpides N.","Kolar M.","Sachova J.","Ridl J.","Ivanova N.","Kapatral V.","Los T.","Lykidis A.","Mikhailova N.","Reznik G.","Vasieva O.","Fonstein M.","Paces V.","Haselkorn R."],"title":"Complete genome sequence of Rhodobacter capsulatus SB1003.","publicationDate":"DEC-2008","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"value":"SB1003","type":"STRAIN"}]},{"referenceNumber":2,"citation":{"id":"20418398","citationType":"journal article","authors":["Strnad H.","Lapidus A.","Paces J.","Ulbrich P.","Vlcek C.","Paces V.","Haselkorn R."],"citationCrossReferences":[{"database":"PubMed","id":"20418398"},{"database":"DOI","id":"10.1128/JB.00366-10"}],"title":"Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.","publicationDate":"2010","journal":"J. Bacteriol.","firstPage":"3545","lastPage":"3546","volume":"192"},"referencePositions":["NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"Proteomes","id":"UP000002361"}],"value":"ATCC BAA-309 / NBRC 16581 / SB1003","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ADE85198.1"},{"evidenceCode":"ECO:0000313","source":"Proteomes","id":"UP000002361"}]},{"referenceNumber":3,"citation":{"id":"33106663","citationType":"journal article","authors":["Capdevila D.A.","Walsh B.J.C.","Zhang Y.","Dietrich C.","Gonzalez-Gutierrez G.","Giedroc D.P."],"citationCrossReferences":[{"database":"PubMed","id":"33106663"},{"database":"DOI","id":"10.1038/s41589-020-00671-9"}],"title":"Structural basis for persulfide-sensing specificity in a transcriptional regulator.","publicationDate":"2021","journal":"Nat. Chem. Biol.","firstPage":"65","lastPage":"70","volume":"17"},"referencePositions":["X-RAY CRYSTALLOGRAPHY (1.36 ANGSTROMS) OF 15-124","CYSTEINE PERSULFIDE AT CYS-55 AND CYS-121","DISULFIDE BONDS"],"evidences":[{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8K"},{"evidenceCode":"ECO:0007829","source":"PDB","id":"6O8L"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"CP001312","properties":[{"key":"ProteinId","value":"ADE85198.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"RefSeq","id":"WP_013067177.1","properties":[{"key":"NucleotideSequenceId","value":"NC_014034.1"}]},{"database":"PDB","id":"6O8K","properties":[{"key":"Method","value":"X-ray"},{"key":"Resolution","value":"2.12 A"},{"key":"Chains","value":"A=15-124"}]},{"database":"PDB","id":"6O8L","properties":[{"key":"Method","value":"X-ray"},{"key":"Resolution","value":"1.36 A"},{"key":"Chains","value":"A=15-124"}]},{"database":"PDB","id":"6O8M","properties":[{"key":"Method","value":"X-ray"},{"key":"Resolution","value":"1.46 A"},{"key":"Chains","value":"A=15-124"}]},{"database":"PDB","id":"6O8N","properties":[{"key":"Method","value":"X-ray"},{"key":"Resolution","value":"1.95 A"},{"key":"Chains","value":"A/B=15-124"}]},{"database":"PDB","id":"6O8O","properties":[{"key":"Method","value":"X-ray"},{"key":"Resolution","value":"2.50 A"},{"key":"Chains","value":"A/B/C/D=15-124"}]},{"database":"PDBsum","id":"6O8K","properties":[{"key":"Description","value":"-"}]},{"database":"PDBsum","id":"6O8L","properties":[{"key":"Description","value":"-"}]},{"database":"PDBsum","id":"6O8M","properties":[{"key":"Description","value":"-"}]},{"database":"PDBsum","id":"6O8N","properties":[{"key":"Description","value":"-"}]},{"database":"PDBsum","id":"6O8O","properties":[{"key":"Description","value":"-"}]},{"database":"AlphaFoldDB","id":"D5AT91","properties":[{"key":"Description","value":"-"}]},{"database":"SMR","id":"D5AT91","properties":[{"key":"Description","value":"-"}]},{"database":"STRING","id":"272942.RCAP_rcc01453","properties":[{"key":"Description","value":"-"}]},{"database":"GeneID","id":"31490336","properties":[{"key":"Description","value":"-"}]},{"database":"KEGG","id":"rcp:RCAP_rcc01453","properties":[{"key":"Description","value":"-"}]},{"database":"eggNOG","id":"COG0640","properties":[{"key":"ToxonomicScope","value":"Bacteria"}]},{"database":"HOGENOM","id":"CLU_097806_6_4_5","properties":[{"key":"Description","value":"-"}]},{"database":"Proteomes","id":"UP000002361","properties":[{"key":"Component","value":"Chromosome"}]},{"database":"GO","id":"GO:0003677","properties":[{"key":"GoTerm","value":"F:DNA binding"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-KW"}]},{"database":"GO","id":"GO:0003700","properties":[{"key":"GoTerm","value":"F:DNA-binding transcription factor activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0006351","properties":[{"key":"GoTerm","value":"P:DNA-templated transcription"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-KW"}]},{"database":"CDD","id":"cd00090","properties":[{"key":"EntryName","value":"HTH_ARSR"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.10.10","properties":[{"key":"EntryName","value":"Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR011991","properties":[{"key":"EntryName","value":"ArsR-like_HTH"}]},{"database":"InterPro","id":"IPR001845","properties":[{"key":"EntryName","value":"HTH_ArsR_DNA-bd_dom"}]},{"database":"InterPro","id":"IPR051011","properties":[{"key":"EntryName","value":"Metal_resp_trans_reg"}]},{"database":"InterPro","id":"IPR036388","properties":[{"key":"EntryName","value":"WH-like_DNA-bd_sf"}]},{"database":"InterPro","id":"IPR036390","properties":[{"key":"EntryName","value":"WH_DNA-bd_sf"}]},{"database":"NCBIfam","id":"NF033788","properties":[{"key":"EntryName","value":"HTH_metalloreg"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR43132","properties":[{"key":"EntryName","value":"ARSENICAL RESISTANCE OPERON REPRESSOR ARSR-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR43132:SF2","properties":[{"key":"EntryName","value":"ARSENICAL RESISTANCE OPERON REPRESSOR ARSR-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01022","properties":[{"key":"EntryName","value":"HTH_5"},{"key":"MatchStatus","value":"1"}]},{"database":"PRINTS","id":"PR00778","properties":[{"key":"EntryName","value":"HTHARSR"}]},{"database":"SMART","id":"SM00418","properties":[{"key":"EntryName","value":"HTH_ARSR"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF46785","properties":[{"key":"EntryName","value":"Winged helix' DNA-binding domain"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50987","properties":[{"key":"EntryName","value":"HTH_ARSR_2"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MDTAQDPQDDFDPEMGSDTDERCAALDAEEMATRARAASNLLKALAHEGRLMIMCYLASGEKSVTELETRLSTRQAAVSQQLARLRLEGLVQSRREGKTIYYSLSDPRAARVVQTVYEQFCSGD","length":124,"molWeight":13779,"crc64":"99B2FDD5F18855B2","md5":"12CEFF6C400E21B099F1BE57CF9840CF"},"extraAttributes":{"countByFeatureType":{"Domain":1,"Modified residue":2,"Disulfide bond":1},"uniParcId":"UPI0001D0842E"}}